Here is a list of all files with brief descriptions:

3DapReader.cpp
3DapReader.h
3Depict.cpp
abundanceParser.cpp
abundanceParser.h
allFilter.cpp
allFilter.h
animateFilterDialog.cpp
animateFilterDialog.h
animator.cpp
animator.h
annotation.cpp
annotation.h
APTFileIO.cpp
APTFileIO.h
APTRanges.cpp
APTRanges.h
array2D.h
art.h
assertion.cpp
assertion.h
autosaveDialog.cpp
autosaveDialog.h
basics.cpp
basics.h
binomial.cpp
binomial.h
boundingBox.cpp
boundingBox.h
cameras.cpp
cameras.h
choiceKeyFrameDialog.cpp
choiceKeyFrameDialog.h
clusterAnalysis.cpp
clusterAnalysis.h
colourKeyFrameDialog.cpp
colourKeyFrameDialog.h
colourmap.cpp
colourmap.h
configFile.cpp
configFile.h
constants.cpp
constants.h
cropPanel.cpp
cropPanel.h
dataLoad.cpp
dataLoad.h
drawables.cpp
drawables.h
effect.cpp
effect.h
endianTest.h
ExportPos.cpp
ExportPos.h
ExportRngDialog.cpp
ExportRngDialog.h
externalProgram.cpp
externalProgram.h
filter.cpp
filter.h
filterCommon.cpp
filterCommon.h
filterErrorDialog.cpp
filterErrorDialog.h
filtertesting.cpp
filtertree.cpp
filtertree.h
filtertreeAnalyse.cpp
filtertreeAnalyse.h
geometryHelpers.cpp
geometryHelpers.h
glDebug.h
glPane.cpp
glPane.h
gsl_helper.cpp
gsl_helper.h
ionClip.cpp
ionClip.h
ionColour.cpp
ionColour.h
ionDownsample.cpp
ionDownsample.h
ionhit.cpp
ionhit.h
ionInfo.cpp
ionInfo.h
isoSurface.cpp
isoSurface.h
K3DTree-mk2.cpp
K3DTree-mk2.h
K3DTree.cpp
K3DTree.h
mainFrame.cpp
mainFrame.h
mass.cpp
mass.h
mathfuncs.cpp
mathfuncs.h
mathglPane.cpp
mathglPane.h
mesh.cpp
mesh.h
mglTesting.cpp
mglTesting.h
plot.cpp
plot.h
pngread.c
pngread.h
prefDialog.cpp
prefDialog.h
profile.cpp
profile.h
propertyGridUpdater.cpp
propertyGridUpdater.h
rangeEditDialog.cpp
rangeEditDialog.h
rangeFile.cpp
rangeFile.h
realKeyFrameDialog.h
resolutionDialog.cpp
resolutionDialog.h
scene.cpp
scene.h
select.cpp
select.h
spatial.cpp
spatial.h
spatialAnalysis.cpp
spatialAnalysis.h
spectrumPlot.cpp
spectrumPlot.h
StashDialog.cpp
StashDialog.h
state.cpp
state.h
stringFuncs.cpp
stringFuncs.h
stringKeyFrameDialog.cpp
stringKeyFrameDialog.h
testing.cpp
testing.h
textures.cpp
textures.h
tr.cpp
tr.h
transform.cpp
transform.h
translation.h
tree.hh
viscontrol.cpp
viscontrol.h
voxelise.cpp
voxelise.h
voxels.cpp
voxels.h
vtk.cpp
vtk.h
winconsole.cpp
winconsole.h
wxcommon.cpp
wxcommon.h
wxcomponents.cpp
wxcomponents.h
xmlHelper.cpp
xmlHelper.h