binomial.h File Reference

#include "common/mathfuncs.h"
#include "backend/APT/ionhit.h"
#include "backend/APT/APTRanges.h"
#include <map>

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Classes
struct	SEGMENT_OPTION
struct	BINOMIAL_HIST
struct	BINOMIAL_STATS
struct	GRID_ENTRY

Enumerations
enum	{ BINOMIAL_SEGMENT_AUTO_BRICK, BINOMIAL_SEGMENT_END }
enum	{ BINOMIAL_NO_MEM =1, BINOMIAL_ERR_END }

Functions
int	countBinnedIons (const std::vector< IonHit > &ions, const RangeFile *rng, const std::vector< size_t > &selectedIons, const SEGMENT_OPTION &segmentOptions, std::vector< GRID_ENTRY > &completedGridEntries)
void	genBinomialHistogram (const std::vector< GRID_ENTRY > &completedGridEntries, unsigned int nSelected, BINOMIAL_HIST &binHist)
void	binomialConvert (const std::vector< std::map< unsigned int, unsigned int > > &ionFrequencies, float binWidth, std::vector< std::vector< float > > &ionConcentrations)
void	computeBinomialStats (const std::vector< GRID_ENTRY > &gridEntries, BINOMIAL_HIST &binHist, unsigned int nSelected, BINOMIAL_STATS &binStats)

Enumeration Type Documentation

anonymous enum

anonymous enum

Enumerator
BINOMIAL_SEGMENT_AUTO_BRICK
BINOMIAL_SEGMENT_END

anonymous enum

anonymous enum

Enumerator
BINOMIAL_NO_MEM
BINOMIAL_ERR_END

Function Documentation

binomialConvert()

void binomialConvert	(	const std::vector< std::map< unsigned int, unsigned int > > &	ionFrequencies,
		float	binWidth,
		std::vector< std::vector< float > > &	ionConcentrations
	)

computeBinomialStats()

void computeBinomialStats	(	const std::vector< GRID_ENTRY > &	gridEntries,
		BINOMIAL_HIST &	binHist,
		unsigned int	nSelected,
		BINOMIAL_STATS &	binStats
	)

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References BINOMIAL_LOWCOUNT_SKEW_THRESHOLD, BINOMIAL_STATS::chiSquare, BINOMIAL_STATS::comparisonCoeff, BINOMIAL_HIST::mapIonFrequencies, BINOMIAL_STATS::mean, BINOMIAL_STATS::nBlocks, BINOMIAL_STATS::nIons, BINOMIAL_STATS::pValue, BINOMIAL_STATS::pValueOK, BINOMIAL_HIST::theoreticFrequencies, and BINOMIAL_HIST::theoreticNormalisedFrequencies.

Referenced by setGridABCoords(), and SpatialAnalysisFilter::setPropFromBinding().

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countBinnedIons()

int countBinnedIons	(	const std::vector< IonHit > &	ions,
		const RangeFile *	rng,
		const std::vector< size_t > &	selectedIons,
		const SEGMENT_OPTION &	segmentOptions,
		std::vector< GRID_ENTRY > &	completedGridEntries
	)

References ASSERT, BINOMIAL_NO_MEM, BINOMIAL_SEGMENT_AUTO_BRICK, GRID_ENTRY::endPt, BoundCube::expand(), SEGMENT_OPTION::extrudeMaxRatio, SEGMENT_OPTION::extrusionDirection, BoundCube::getBound(), IonHit::getBoundCube(), RangeFile::getIonID(), RangeFile::getNumIons(), BoundCube::getSize(), SEGMENT_OPTION::nIons, GRID_ENTRY::nIons, RangeFile::range(), rowMajorOffset(), setGridABCoords(), Point3D::setValue(), GRID_ENTRY::startPt, SEGMENT_OPTION::strategy, GRID_ENTRY::totalIons, vectorMultiErase(), and BoundCube::volume().

Referenced by setGridABCoords(), and SpatialAnalysisFilter::setPropFromBinding().

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genBinomialHistogram()

void genBinomialHistogram	(	const std::vector< GRID_ENTRY > &	completedGridEntries,
		unsigned int	nSelected,
		BINOMIAL_HIST &	binHist
	)

References ASSERT, BINOMIAL_HIST::mapIonFrequencies, and BINOMIAL_HIST::normalisedFrequencies.

Referenced by setGridABCoords(), and SpatialAnalysisFilter::setPropFromBinding().

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