IonHit Class Reference

This is a data holding class for POS file ions, from. More...

#include <ionhit.h>

Public Member Functions
	IonHit ()
	IonHit (float *)
	IonHit (const IonHit &)
	IonHit (const Point3D &p, float massToCharge)
void	setHit (float *arr)
void	setMassToCharge (float newMassToCharge)
void	setPos (const Point3D &pos)
void	setPos (float fX, float fY, float fZ)
Point3D	getPos () const
const Point3D &	getPosRef () const
bool	hasNaN ()
bool	hasInf ()
void	makePosData (float *floatArr) const
float	getMassToCharge () const
const IonHit &	operator= (const IonHit &obj)
float	operator[] (unsigned int ui) const
IonHit	operator+ (const Point3D &obj)

Static Public Member Functions
static void	getPoints (const std::vector< IonHit > &ions, std::vector< Point3D > &pts)
static void	getBoundCube (const std::vector< IonHit > &p, BoundCube &b)
static void	getCentroid (const std::vector< IonHit > &points, Point3D &centroid)
static unsigned int	appendFile (const std::vector< IonHit > &points, const char *name, const unsigned int format=IONFORMAT_POS)
static unsigned int	makePos (const std::vector< IonHit > &points, const char *name)
	Create an pos file from a vector of IonHits. More...

Static Public Attributes
static const unsigned int	DATA_SIZE = 16

Detailed Description

This is a data holding class for POS file ions, from.

Constructor & Destructor Documentation

IonHit() [1/4]

IonHit::IonHit

(

)

IonHit() [2/4]

IonHit::IonHit

(

float *

buffer

)

IonHit() [3/4]

IonHit::IonHit

(

const IonHit &

obj2

)

IonHit() [4/4]

IonHit::IonHit	(	const Point3D &	p,
		float	massToCharge
	)

Member Function Documentation

appendFile()

unsigned int IonHit::appendFile ( const std::vector< IonHit > &  points, const char *  name, const unsigned int  format = IONFORMAT_POS  )

static

References ASSERT, IONFORMAT_POS, and IONFORMAT_TEXT.

Referenced by IonStreamData::exportStreams(), and getPosRef().

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getBoundCube()

void IonHit::getBoundCube ( const std::vector< IonHit > &  p, BoundCube &  b  )

static

References ASSERT, BoundCube::expand(), BoundCube::getBound(), Point3D::getValue(), BoundCube::isValid(), BoundCube::setBound(), BoundCube::setBounds(), BoundCube::setInverseLimits(), setMassToCharge(), setPos(), and TEST.

Referenced by countBinnedIons(), getPosRef(), getRectilinearBounds(), TransformFilter::refresh(), VoxeliseFilter::refresh(), DataLoadFilter::refresh(), K3DTreeMk2::resetPts(), and TransformFilter::setPropFromBinding().

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getCentroid()

void IonHit::getCentroid ( const std::vector< IonHit > &  points, Point3D &  centroid  )

static

References getPos().

Referenced by computeMatrixEntries(), and getPosRef().

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getMassToCharge()

float IonHit::getMassToCharge

(

)

const

Referenced by RangeFile::getName(), getPosRef(), RangeFile::isRanged(), RangeFile::range(), RangeFile::rangeByIon(), RangeFile::rangeByRangeID(), and TransformFilter::setPropFromBinding().

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getPoints()

void IonHit::getPoints ( const std::vector< IonHit > &  ions, std::vector< Point3D > &  pts  )

static

References getPosRef().

Referenced by getPosRef().

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getPos()

Point3D IonHit::getPos

(

)

const

Referenced by getCentroid(), IonAxisCompare::operator()(), setPos(), and SpatialAnalysisFilter::setPropFromBinding().

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getPosRef()

const Point3D& IonHit::getPosRef ( ) const

inline

References appendFile(), getBoundCube(), getCentroid(), getMassToCharge(), getPoints(), hasInf(), hasNaN(), IONFORMAT_POS, makePos(), makePosData(), operator+(), operator=(), and operator[]().

Referenced by assignIonData(), getPoints(), and CropHelper::mapIon1D().

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hasInf()

bool IonHit::hasInf

(

)

Referenced by GenericLoadFloatFile(), and getPosRef().

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hasNaN()

bool IonHit::hasNaN

(

)

Referenced by GenericLoadFloatFile(), and getPosRef().

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makePos()

unsigned int IonHit::makePos ( const std::vector< IonHit > &  points, const char *  name  )

static

Create an pos file from a vector of IonHits.

Referenced by computeMatrixEntries(), getPosRef(), DataLoadFilter::monitorNeedsRefresh(), ExternalProgramFilter::refresh(), and SpatialAnalysisFilter::setPropFromBinding().

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makePosData()

void IonHit::makePosData

(

float *

floatArr

)

const

References ASSERT, Point3D::copyValueArr(), and floatSwapBytes().

Referenced by getPosRef(), and loadTapsimBinFile().

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operator+()

IonHit IonHit::operator+

(

const Point3D &

obj

)

Referenced by getPosRef().

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operator=()

const IonHit & IonHit::operator=

(

const IonHit &

obj

)

Referenced by getPosRef().

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operator[]()

float IonHit::operator[]

(

unsigned int

ui

)

const

References ASSERT.

Referenced by getPosRef().

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setHit()

void IonHit::setHit ( float *  arr )

inline

References setMassToCharge(), setPos(), and Point3D::setValueArr().

Referenced by GenericLoadFloatFile().

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setMassToCharge()

void IonHit::setMassToCharge

(

float

newMassToCharge

)

Referenced by computeMatrixEntries(), cylinderReconstruct(), getBoundCube(), IonColourFilter::getRefreshUseMask(), BoundingBoxFilter::getRefreshUseMask(), IonDownsampleFilter::getRefreshUseMask(), loadTapsimBinFile(), SpectrumPlotFilter::needsUnrangedData(), IonInfoFilter::needsUnrangedData(), setHit(), IonClipFilter::setPropFromBinding(), TransformFilter::setPropFromBinding(), ProfileFilter::setPropFromBinding(), SpatialAnalysisFilter::setPropFromBinding(), and RangeFileFilter::writePackageState().

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setPos() [1/2]

void IonHit::setPos

(

const Point3D &

pos

)

References floatSwapBytes().

Referenced by computeMatrixEntries(), cylinderReconstruct(), getBoundCube(), IonColourFilter::getRefreshUseMask(), BoundingBoxFilter::getRefreshUseMask(), IonDownsampleFilter::getRefreshUseMask(), loadTapsimBinFile(), SpectrumPlotFilter::needsUnrangedData(), IonInfoFilter::needsUnrangedData(), setHit(), IonClipFilter::setPropFromBinding(), TransformFilter::setPropFromBinding(), ProfileFilter::setPropFromBinding(), SpatialAnalysisFilter::setPropFromBinding(), and RangeFileFilter::writePackageState().

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setPos() [2/2]

void IonHit::setPos ( float  fX, float  fY, float  fZ  )

inline

References getPos(), and Point3D::setValue().

Member Data Documentation

DATA_SIZE

const unsigned int IonHit::DATA_SIZE = 16

static

Referenced by GenericLoadFloatFile().

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The documentation for this class was generated from the following files:

• ionhit.h
• ionhit.cpp