voxelise.cpp File Reference

#include "voxelise.h"
#include "common/colourmap.h"
#include "filterCommon.h"
#include <map>

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Enumerations
enum	{   KEY_FIXEDWIDTH, KEY_NBINSX, KEY_NBINSY, KEY_NBINSZ,   KEY_WIDTHBINSX, KEY_WIDTHBINSY, KEY_WIDTHBINSZ, KEY_COUNT_TYPE,   KEY_NORMALISE_TYPE, KEY_SPOTSIZE, KEY_TRANSPARENCY, KEY_COLOUR,   KEY_ISOLEVEL, KEY_VOXEL_REPRESENTATION_MODE, KEY_VOXEL_SLICE_COLOURAUTO, KEY_MAPEND,   KEY_MAPSTART, KEY_SHOW_COLOURBAR, KEY_VOXEL_COLOURMODE, KEY_VOXEL_SLICE_AXIS,   KEY_VOXEL_SLICE_OFFSET, KEY_VOXEL_SLICE_INTERP, KEY_VOXEL_SLICE_OFFSET3D, KEY_VOXEL_SLICE_NORMAL3D,   KEY_FILTER_MODE, KEY_FILTER_RATIO, KEY_FILTER_STDEV, KEY_ENABLE_NUMERATOR,   KEY_ENABLE_DENOMINATOR }
enum	{   VOXELISE_NORMALISETYPE_NONE, VOXELISE_NORMALISETYPE_VOLUME, VOXELISE_NORMALISETYPE_ALLATOMSINVOXEL, VOXELISE_NORMALISETYPE_COUNT2INVOXEL,   VOXELISE_NORMALISETYPE_MAX }
	Normalisation method. More...
enum	{ VOXELISE_FILTERTYPE_NONE, VOXELISE_FILTERTYPE_GAUSS, VOXELISE_FILTERTYPE_LAPLACE, VOXELISE_FILTERTYPE_MAX }
	Filtering mode. More...
enum	{ VOXELISE_FILTERBOUNDMODE_ZERO, VOXELISE_FILTERBOUNDMODE_BOUNCE, VOXELISE_FILTERBOUNDMODE_MAX }
enum	{   VOXELISE_ABORT_ERR =1, VOXELISE_MEMORY_ERR, VOXELISE_CONVOLVE_ERR, VOXELISE_BOUNDS_INVALID_ERR,   VOXELISE_ERR_ENUM_END }

Functions
int	countPoints (Voxels< float > &v, const std::vector< IonHit > &points, bool noWrap)

Variables
const bool	VOXEL_REPRESENT_KEEPCACHE []
	Can we keep the cached contents, when transitioning from. More...
const char *	NORMALISE_TYPE_STRING []
const char *	REPRESENTATION_TYPE_STRING []
const char *	VOXELISE_FILTER_TYPE_STRING []
const char *	VOXELISE_SLICE_INTERP_STRING []

Enumeration Type Documentation

anonymous enum

anonymous enum

Enumerator
KEY_FIXEDWIDTH
KEY_NBINSX
KEY_NBINSY
KEY_NBINSZ
KEY_WIDTHBINSX
KEY_WIDTHBINSY
KEY_WIDTHBINSZ
KEY_COUNT_TYPE
KEY_NORMALISE_TYPE
KEY_SPOTSIZE
KEY_TRANSPARENCY
KEY_COLOUR
KEY_ISOLEVEL
KEY_VOXEL_REPRESENTATION_MODE
KEY_VOXEL_SLICE_COLOURAUTO
KEY_MAPEND
KEY_MAPSTART
KEY_SHOW_COLOURBAR
KEY_VOXEL_COLOURMODE
KEY_VOXEL_SLICE_AXIS
KEY_VOXEL_SLICE_OFFSET
KEY_VOXEL_SLICE_INTERP
KEY_VOXEL_SLICE_OFFSET3D
KEY_VOXEL_SLICE_NORMAL3D
KEY_FILTER_MODE
KEY_FILTER_RATIO
KEY_FILTER_STDEV
KEY_ENABLE_NUMERATOR
KEY_ENABLE_DENOMINATOR

anonymous enum

anonymous enum

Normalisation method.

Enumerator
VOXELISE_NORMALISETYPE_NONE
VOXELISE_NORMALISETYPE_VOLUME
VOXELISE_NORMALISETYPE_ALLATOMSINVOXEL
VOXELISE_NORMALISETYPE_COUNT2INVOXEL
VOXELISE_NORMALISETYPE_MAX

anonymous enum

anonymous enum

Filtering mode.

Enumerator
VOXELISE_FILTERTYPE_NONE
VOXELISE_FILTERTYPE_GAUSS
VOXELISE_FILTERTYPE_LAPLACE
VOXELISE_FILTERTYPE_MAX

anonymous enum

anonymous enum

Enumerator
VOXELISE_FILTERBOUNDMODE_ZERO
VOXELISE_FILTERBOUNDMODE_BOUNCE
VOXELISE_FILTERBOUNDMODE_MAX

anonymous enum

anonymous enum

Enumerator
VOXELISE_ABORT_ERR
VOXELISE_MEMORY_ERR
VOXELISE_CONVOLVE_ERR
VOXELISE_BOUNDS_INVALID_ERR
VOXELISE_ERR_ENUM_END

Function Documentation

countPoints()

int countPoints	(	Voxels< float > &	v,
		const std::vector< IonHit > &	points,
		bool	noWrap
	)

References ASSERT, Voxels< T >::getData(), Voxels< T >::getIndexWithUpper(), Voxels< T >::getSize(), MAX_CALLBACK, Voxels< T >::setData(), and Filter::wantAbort.

Referenced by Voxels< float >::clear(), and VoxeliseFilter::refresh().

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Variable Documentation

NORMALISE_TYPE_STRING

const char* NORMALISE_TYPE_STRING[]

Initial value:

= {
                NTRANS("None (Raw count)"),
                NTRANS("Volume (Density)"),
                NTRANS("All Ions (conc)"),
                NTRANS("Ratio (Num/Denom)"),
        }

Referenced by VoxeliseFilter::getNormaliseTypeString(), VoxeliseFilter::getRefreshUseMask(), and VoxeliseFilter::VoxeliseFilter().

REPRESENTATION_TYPE_STRING

const char* REPRESENTATION_TYPE_STRING[]

Initial value:

= {
                NTRANS("Point Cloud"),
                NTRANS("Isosurface"),
                NTRANS("Axial slice"),

        }

Referenced by VoxeliseFilter::getRepresentTypeString(), and VoxeliseFilter::VoxeliseFilter().

VOXEL_REPRESENT_KEEPCACHE

const bool VOXEL_REPRESENT_KEEPCACHE[]

Initial value:

= {
        true,
        true,
        false,
        false,
}

Can we keep the cached contents, when transitioning from.

Referenced by VoxeliseFilter::setProperty(), and VoxeliseFilter::VoxeliseFilter().

VOXELISE_FILTER_TYPE_STRING

const char* VOXELISE_FILTER_TYPE_STRING[]

Initial value:

={
        NTRANS("None"),
        NTRANS("Gaussian (blur)"),
        NTRANS("Lapl. of Gauss. (edges)"),
        }

Referenced by VoxeliseFilter::getFilterTypeString(), and VoxeliseFilter::VoxeliseFilter().

VOXELISE_SLICE_INTERP_STRING

const char* VOXELISE_SLICE_INTERP_STRING[]

Initial value:

={
        NTRANS("None"),

        }

Referenced by VoxeliseFilter::getProperties(), and VoxeliseFilter::setProperty().