spatialAnalysis.cpp File Reference

#include <gsl/gsl_sf_gamma.h>
#include "spatialAnalysis.h"
#include "algorithms/spatial.h"
#include "geometryHelpers.h"
#include "filterCommon.h"
#include "algorithms/binomial.h"
#include "algorithms/K3DTree-mk2.h"
#include "backend/plot.h"
#include "../APT/APTFileIO.h"

Include dependency graph for spatialAnalysis.cpp:

Enumerations
enum	{   KEY_STOPMODE, KEY_ALGORITHM, KEY_DISTMAX, KEY_NNMAX,   KEY_NNMAX_NORMALISE, KEY_NNMAX_SHOWRANDOM, KEY_NUMBINS, KEY_REMOVAL,   KEY_REDUCTIONDIST, KEY_RETAIN_UPPER, KEY_CUTOFF, KEY_COLOUR,   KEY_ENABLE_SOURCE_ALL, KEY_ENABLE_TARGET_ALL, KEY_ENABLE_NUMERATOR_ALL, KEY_ENABLE_DENOMINATOR_ALL,   KEY_ORIGIN, KEY_NORMAL, KEY_RADIUS, KEY_NUMIONS,   KEY_SHOW_BINOM_FREQ, KEY_SHOW_BINOM_NORM_FREQ, KEY_SHOW_BINOM_THEOR_FREQ, KEY_SHOW_BINOM_3D_GRID,   KEY_BINOMIAL_MAX_ASPECT, KEY_BINOMIAL_EXTRUDE_DIR, KEY_REPLACE_FILE, KEY_REPLACE_TOLERANCE,   KEY_REPLACE_ALGORITHM, KEY_REPLACE_VALUE }
enum	{ KEYTYPE_ENABLE_SOURCE =1, KEYTYPE_ENABLE_TARGET, KEYTYPE_ENABLE_NUMERATOR, KEYTYPE_ENABLE_DENOMINATOR }
enum	{   ALGORITHM_DENSITY, ALGORITHM_DENSITY_FILTER, ALGORITHM_RDF, ALGORITHM_AXIAL_DF,   ALGORITHM_BINOMIAL, ALGORITHM_REPLACE, ALGORITHM_LOCAL_CHEMISTRY, ALGORITHM_ENUM_END }
enum	{ STOP_MODE_NEIGHBOUR, STOP_MODE_RADIUS, STOP_MODE_ENUM_END }
enum	{ REPLACE_MODE_SUBTRACT, REPLACE_MODE_INTERSECT, REPLACE_MODE_UNION, REPLACE_MODE_ENUM_END }
enum	{   ERR_ABORT_FAIL =1, ERR_BINOMIAL_NO_MEM, ERR_NO_RANGE, ERR_BINOMIAL_BIN_FAIL,   INSUFFICIENT_SIZE_ERR, ERR_FILE_READ_FAIL, SPAT_ERR_END_OF_ENUM }
	Error codes. More...

Functions
float	weightedMean (const vector< float > &x, const vector< float > &y, bool zeroOutSingularity=true)

Variables
const char *	SPATIAL_ALGORITHMS []
const char *	STOP_MODES []
const char *	REPLACE_ALGORITHMS []
const bool	WANT_RANGE_PROPAGATION []
const float	DEFAULT_AXIAL_DISTANCE = 1.0f
const float	DISTANCE_EPSILON =sqrt(std::numeric_limits<float>::epsilon())

Enumeration Type Documentation

anonymous enum

anonymous enum

Enumerator
KEY_STOPMODE
KEY_ALGORITHM
KEY_DISTMAX
KEY_NNMAX
KEY_NNMAX_NORMALISE
KEY_NNMAX_SHOWRANDOM
KEY_NUMBINS
KEY_REMOVAL
KEY_REDUCTIONDIST
KEY_RETAIN_UPPER
KEY_CUTOFF
KEY_COLOUR
KEY_ENABLE_SOURCE_ALL
KEY_ENABLE_TARGET_ALL
KEY_ENABLE_NUMERATOR_ALL
KEY_ENABLE_DENOMINATOR_ALL
KEY_ORIGIN
KEY_NORMAL
KEY_RADIUS
KEY_NUMIONS
KEY_SHOW_BINOM_FREQ
KEY_SHOW_BINOM_NORM_FREQ
KEY_SHOW_BINOM_THEOR_FREQ
KEY_SHOW_BINOM_3D_GRID
KEY_BINOMIAL_MAX_ASPECT
KEY_BINOMIAL_EXTRUDE_DIR
KEY_REPLACE_FILE
KEY_REPLACE_TOLERANCE
KEY_REPLACE_ALGORITHM
KEY_REPLACE_VALUE

anonymous enum

anonymous enum

Enumerator
KEYTYPE_ENABLE_SOURCE
KEYTYPE_ENABLE_TARGET
KEYTYPE_ENABLE_NUMERATOR
KEYTYPE_ENABLE_DENOMINATOR

anonymous enum

anonymous enum

Enumerator
ALGORITHM_DENSITY
ALGORITHM_DENSITY_FILTER
ALGORITHM_RDF
ALGORITHM_AXIAL_DF
ALGORITHM_BINOMIAL
ALGORITHM_REPLACE
ALGORITHM_LOCAL_CHEMISTRY
ALGORITHM_ENUM_END

anonymous enum

anonymous enum

Enumerator
STOP_MODE_NEIGHBOUR
STOP_MODE_RADIUS
STOP_MODE_ENUM_END

anonymous enum

anonymous enum

Enumerator
REPLACE_MODE_SUBTRACT
REPLACE_MODE_INTERSECT
REPLACE_MODE_UNION
REPLACE_MODE_ENUM_END

anonymous enum

anonymous enum

Error codes.

Enumerator
ERR_ABORT_FAIL
ERR_BINOMIAL_NO_MEM
ERR_NO_RANGE
ERR_BINOMIAL_BIN_FAIL
INSUFFICIENT_SIZE_ERR
ERR_FILE_READ_FAIL
SPAT_ERR_END_OF_ENUM

Function Documentation

weightedMean()

float weightedMean	(	const vector< float > &	x,
		const vector< float > &	y,
		bool	zeroOutSingularity = true
	)

References ASSERT.

Referenced by SpatialAnalysisFilter::setPropFromBinding().

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Variable Documentation

DEFAULT_AXIAL_DISTANCE

const float DEFAULT_AXIAL_DISTANCE = 1.0f

Referenced by SpatialAnalysisFilter::setPropFromBinding().

DISTANCE_EPSILON

const float DISTANCE_EPSILON =sqrt(std::numeric_limits<float>::epsilon())

Referenced by SpatialAnalysisFilter::setPropFromBinding().

REPLACE_ALGORITHMS

const char* REPLACE_ALGORITHMS[]

Initial value:

= { "Subtract",
                                        "Intersect",
                                        "Union",
                                        }

Referenced by SpatialAnalysisFilter::getProperties(), SpatialAnalysisFilter::setProperty(), SpatialAnalysisFilter::setPropFromBinding(), and SpatialAnalysisFilter::SpatialAnalysisFilter().

SPATIAL_ALGORITHMS

const char* SPATIAL_ALGORITHMS[]

Initial value:

= {
        NTRANS("Local Density"),
        NTRANS("Density Filtering"),
        NTRANS("Radial Distribution"),
        NTRANS("Axial Distribution"),
        NTRANS("Binomial Distribution"),
        NTRANS("Point Em/Replacement"),
        NTRANS("Local Chemistry"),
        }

Referenced by SpatialAnalysisFilter::getProperties(), SpatialAnalysisFilter::setProperty(), SpatialAnalysisFilter::setPropFromBinding(), and SpatialAnalysisFilter::SpatialAnalysisFilter().

STOP_MODES

const char* STOP_MODES[]

Initial value:

= {
        NTRANS("Neighbour Count"),

}

Referenced by SpatialAnalysisFilter::getProperties(), SpatialAnalysisFilter::setProperty(), SpatialAnalysisFilter::setPropFromBinding(), and SpatialAnalysisFilter::SpatialAnalysisFilter().

WANT_RANGE_PROPAGATION

const bool WANT_RANGE_PROPAGATION[]

Initial value:

= { false, 
                                        true,
                                        false,
                                        false,
                                        false,
                                        true,
                                        false,
                                        }

Referenced by SpatialAnalysisFilter::getRefreshBlockMask(), SpatialAnalysisFilter::initFilter(), SpatialAnalysisFilter::refresh(), and SpatialAnalysisFilter::SpatialAnalysisFilter().